xtractore1
Extract sequences corresponding to annotated features from the given sequence file
Usage
xtractore [options]
features.gff3
sequences.fasta
Overview
Options:
-d|--debug-
print debugging output
-h|--help-
print this help message and exit
-i|--idfile: FILE-
file containing a list of feature IDs (1 per line with no spaces); if provided, only features with IDs in this file will be extracted
-o|--outfile: FILE-
file to which output sequences will be written; default is terminal (stdout)
-t|--type: STRING-
feature type to extract; can be used multiple times to extract features of multiple types
-v|--version-
print version number and exit
-V|--verbose-
print verbose warning and error messages
-w|--width: INT-
width of each line of sequence in the Fasta output; default is 80; set to 0 for no formatting
Releases
Unchanged in 5 releases since Debian 9 (Stretch).