wgsim1
Short read simulator
Usage
wgsim [options]
<in.ref.fa>
<out.read1.fq>
<out.read2.fq>
Options
-
-e FLOAT -
base error rate [0.020]
-
-d INT -
outer distance between the two ends [500]
-
-s INT -
standard deviation [50]
-
-N INT -
number of read pairs [1000000]
-
-1 INT -
length of the first read [70]
-
-2 INT -
length of the second read [70]
-
-r FLOAT -
rate of mutations [0.0010]
-
-R FLOAT -
fraction of indels [0.15]
-
-X FLOAT -
probability an indel is extended [0.30]
-
-S INT -
seed for random generator [-1]
-
-h -
haplotype mode
Releases
Unchanged in 5 releases since Debian 9 (Stretch).