vcfstreamsort1

Usage

Overview

Sorts the input (either stdin or file) using a streaming sort algorithm. Guarantees that the positional order is correct provided out-of-order variants are no more than 100 positions in the VCF file apart.

Options

options:
    -h, --help             this dialog
    -w, --window N         number of sites to sort (default 10000)
    -a, --all              load all sites and then sort in memory
Type: transformation

Exit status

0

Success

not 0

Failure

Other