vcfcheck1

Usage

Overview

Validate integrity and identity of the VCF by verifying that the VCF record’s REF matches a given reference file.

Options

options:
    -f, --fasta-reference  FASTA reference file to use to obtain primer sequences.
    -x, --exclude-failures If a record fails, don't print it.  Otherwise do.
    -k, --keep-failures    Print if the record fails, otherwise not.
    -i, --ignore-case      Ignore case differences between FASTA reference and vcf.
    -h, --help             Print this message.
    -v, --version          Print version.
Type: metrics

Exit status

0

Success

not 0

Failure

Other