vcfannotate1

Usage

Overview

Intersect the records in the VCF file with targets provided in a BED file. Intersections are done on the reference sequences in the VCF file. If no VCF filename is specified on the command line (last argument) the VCF read from stdin.

Options

options:
    -b, --bed   use annotations provided by this BED file
    -k, --key   use this INFO field key for the annotations
    -d, --default  use this INFO field key for records without annotations
Type: transformation

Exit status

0

Success

not 0

Failure

Other