subindel(1)

subindel1

Toolkit for processing next-gen sequencing data

Overview

SubIndel: detect short and long indels

Usage:

: subindel -i <SAM file> -g <subread index> -o <output VCF> {-d <expected fragment distance>} {-I <max indel length>} {--paired-end}

Example:

: subindel -i my_paired_end_reads.SAM -g my_index -o my_result -d 300 -I 200 --paired-end

Releases

5 releases since Debian 9 (Stretch); the text changed 4 times.

9
10
11
12
13