simkaMerge(1)

simkaMerge1

Comparative metagenomics method dedicated to ngs datasets

Overview

ERROR: Unknown parameter '-h' ERROR: Option '-nb-cores' is mandatory ERROR: Option '-kmer-size' is mandatory ERROR: Option '-in' is mandatory ERROR: Option '-out-tmp-simka' is mandatory ERROR: Option '-partition-id' is mandatory ERROR: Option '-nb-cores' is mandatory ERROR: Option '-max-memory' is mandatory ERROR: Option '-kmer-shannon-index' is mandatory

[SimkaMerge options]

-nb-cores

(1 arg) : number of cores [default '0']

-verbose

(1 arg) : verbosity level [default '1']

-version

(0 arg) : version

-help

(0 arg) : help

-nb-cores

(1 arg) : nb cores

-kmer-size

(1 arg) : kmer size

-in

(1 arg) : input filename

-out-tmp-simka

(1 arg) : tmp output

-partition-id

(1 arg) : bank name

-nb-cores

(1 arg) : bank name

-max-memory

(1 arg) : bank name

-kmer-shannon-index (1 arg) :

bank name

-simple-dist

(0 arg) : compute simple distances

-complex-dist

(0 arg) : compute complex distances

Releases

Unchanged in 3 releases since Debian 11 (Bullseye).

  1. 11–13

Author

This manpage was written by Shayan Doust for the Debian distribution and can be used for any other usage of the program.

From simka 1.5.3-8+b3 in Debian 13 (Trixie). Parsed by carta from the page's man source.