rdp-alignment1
Ribosomal database project (rdp) alignment tools package
Usage
rdp-alignment <subcommand>
<options>
Overview
The Alignment tools package contains commands to do defined community analysis, pairwise alignment and hidden markov model (HMMER3 models, no training).
Options
List of subcommands:
- alignment-merger
-
- Merge alignments
- pairwise-knn
-
- Compute k-nearest-neighbors by pairwise alignment
- compare-error-type
-
- Detect insertion, deletion and substitution errors in sequences comparing to reference sequences
- align-nucl-to-prot
-
- Transfer a sequence alignment from protein sequences to nucleotide sequences
- rm-partialseq
-
- remove partial sequences based on pairwise alignment to reference sequences
Releases
Unchanged in 5 releases since Debian 9 (Stretch).