quorum_create_database1
Create database of k-mers for quorum error corrector
Usage
create_database_cmdline [options]
reads:path+
Overview
Create database of k-mers for quorum error corrector
Create k-mer database for quorum_error_correct
Options
default value in (), *required:
-
-s, --size=uint64 -
*Initial hash size
-
-m, --mer=uint32 -
*Mer length
-
-b, --bits=uint32 -
*Bits for value field
-
-q, --min-qual-value=uint32 -
Min quality as an int
-
-Q, --min-qual-char=string -
Min quality as a ASCII character
-
-t, --threads=uint32 -
Number of threads (1)
-
-o, --output=path -
Output file (combined_database)
-
-p, --reprobe=int32 -
Maximum number of reprobes (126)
-
-U, --usage -
Usage
-
-h, --help -
This message
-
-V, --version -
Version
Releases
Unchanged in 4 releases since Debian 10 (Buster).