quality_check1
Perform a sanity check on the mapping results (sam file)
Usage
quality_check [Options]
SAMFILE
Overview
Perform a sanity check on the mapping results (SAM file).
This tool analyzes the output of the read mapper and provides useful information to the user to decide whether the set of reference sequences and the mapper settings are feasible for the given dataset.
Options
- SAMFILE
-
Name of the SAM file to analyze
-
-h, --help -
show this help message and exit
-
-o OUT, --outpath=OUT -
Path to the directory for the analysis output. [default: ./]
Releases
Unchanged in 6 releases since Debian 8 (Jessie).