polydot1e
Draw dotplots for all-against-all comparison of a sequence set
Usage
polydot -sequences
seqset
-wordsize
integer
-gap
integer
[-boxit
boolean]
[-dumpfeat
toggle]
-outfeat
featout
-graph
graph
polydot -help
Overview
polydot is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Dot plots" command group(s).
Options
Input section
-
-sequences seqset -
File containing a sequence alignment
Required section
-
-wordsize integer -
Default value: 6
Output section
-
-gap integer -
This specifies the size of the gap that is used to separate the individual dotplots in the display. The size is measured in residues, as displayed in the output. Default value: 10
-
-boxit boolean -
Default value: Y
-
-dumpfeat toggle -
Default value: N
-
-outfeat featout
-
-graph graph
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.