notseq1e
Write to file a subset of an input stream of sequences
Usage
notseq -sequence
seqall
-exclude
string
-outseq
seqoutall
[-junkoutseq
seqoutall]
notseq -help
Overview
notseq is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Edit" command group(s).
Options
Input section
-
-sequence seqall
Required section
-
-exclude string -
Enter a list of sequence names or accession numbers to exclude from the sequences read in. The excluded sequences will be written to the file specified in the 'junkout' parameter. The remainder will be written out to the file specified in the 'outseq' parameter. The list of sequence names can be separated by either spaces or commas. The sequence names can be wildcarded. The sequence names are case independent. An example of a list of sequences to be excluded is: myseq, hs*, one two three a file containing a list of sequence names can be specified by giving the file name preceded by a '@', eg: '@names.dat'
Output section
-
-outseq seqoutall
-
-junkoutseq seqoutall -
This file collects the sequences which you have excluded from the main output file of sequences. Default value: /dev/null
Releases
9 releases since Debian 5.0 (Lenny); the text changed 3 times.