martquery1e
Perform a biomart query
Usage
martquery -dataset
string
-attributes
string
-filters
string
-host
string
-path
string
-port
integer
-outfile
outfile
martquery -help
Overview
martquery is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Edit" command group(s).
Options
Input section
-
-dataset string -
Default value: drerio_gene_ensembl
-
-attributes string -
Default value: ensembl_gene_id,ensembl_transcript_id
-
-filters string -
Default value: with_transmembrane_domain
Advanced section
-
-host string -
Default value: www.biomart.org
-
-path string -
Default value: /biomart/martservice
-
-port integer -
Default value: 80
Output section
-
-outfile outfile
Releases
Unchanged in 7 releases since Debian 7 (Wheezy).