libscanout1
Reads a dhf file and writes a file of top-scoring classes, folds and superfamilies.
Usage
libscanout -dhfinfile
infile
-outfile
outfile
libscanout -help
Overview
libscanout is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:3D Structure" command group(s).
Options
Input section
-
-dhfinfile infile -
This option specifies the location of the DHF file (domain hits file) (input). A ´domain hits file´ contains database hits (sequences) with domain classification information, in FASTA or EMBL formats. The hits are relatives to a SCOP or CATH family and are found from a search of a sequence database. Files containing hits retrieved by PSIBLAST are generated by using SEQSEARCH.
Required section
Output section
-
-outfile outfile -
This option specifies the location of the summary file (output). The summary file contains lists of domain Classes, Superfamilies and Families rank-ordered on the basis of score (highest-scoring first).