lefse_plot_res.py1

positional arguments:

optional arguments:

-h, --help

show this help message and exit

--feature_font_size FEATURE_FONT_SIZE

the file for the output image

--format {png,svg,pdf}

the format for the output file

--dpi DPI

--title TITLE

--title_font_size TITLE_FONT_SIZE

--class_legend_font_size CLASS_LEGEND_FONT_SIZE

--width WIDTH

--height HEIGHT

only for vertical histograms

--left_space LS

--right_space RS

--orientation {h,v}

--autoscale {0,1}

--background_color {k,w}

set the color of the background

--subclades N_SCL

number of label levels to be displayed (starting from the leaves, -1 means all the levels, 1 is default )

--max_feature_len MAX_FEATURE_LEN

Maximum length of feature strings (def 60)

--all_feats ALL_FEATS

--otu_only

Plot only species resolved OTUs (as opposed to all levels)

--report_features

Report important features to STDOUT