lambda(1) on Linux
The text 8a890ff8e817, as Debian 10 (Buster) shipped it.
the Local Aligner for Massive Biological DatA
Flags it lists
-
--alphabet-reduction -
--band -
--copyright -
--database -
--db-index-type -
--e-value -
--filter-putative-abundant -
--filter-putative-duplicates -
--full-help -
--genetic-code -
--help -
--num-matches -
--output -
--output-columns -
--percent-identity -
--pre-scoring -
--pre-scoring-threshold -
--program -
--query -
--query-index-type -
--sam-bam-clip -
--sam-bam-seq -
--sam-bam-tags -
--sam-with-refheader -
--score-gap -
--score-gap-open -
--score-match -
--score-mismatch -
--scoring-scheme -
--seed-delta -
--seed-length -
--seed-offset -
--threads -
--verbosity -
--version -
--version-check -
--x-drop -
-ar -
-b -
-d -
-di -
-e -
-g -
-ge -
-go -
-h -
-hh -
-id -
-ma -
-mi -
-nm -
-o -
-oc -
-p -
-pa -
-pd -
-ps -
-pt -
-q -
-qi -
-sc -
-sd -
-sl -
-so -
-t -
-v -
-x