jaligner1
Smith-waterman algorithm with gotoh's improvement
Usage
jaligner <s1>
<s2>
<matrix>
<open>
<extend>
Or just
type
jaligner
to
see
the
GUI.
Examples
jaligner p53_{human,mouse}.fasta BLOSUM62 10 0.5
Homepage
<http://jaligner.sourceforge.net/>
Releases
5 releases since Debian 9 (Stretch); the text changed 4 times.