insdseqget1
Format sequences from genbank as an xml insdset
Usage
insdseqget [-]
[-d
filename]
[-i
filename]
[-m
n/p/b]
[-n]
[-o
filename]
[-v]
Overview
insdseqget retrieves biological sequence data from GenBank (according to an input list of GI accession numbers) and prints it out as an XML INSDSet document.
Options
A summary of options is included below.
--
Print usage message
-
-d filename -
Input file name for date list (desired accessions, one per line, followed by a blank line and a list of allowed dates, also one per line)
-
-i filename -
Input file name for GI list (default = stdin)
-
-m n/p/b -
Molecule type:
- n
-
Nucleotide (default)
- p
-
Protein
- b
-
Both
-
-n -
Return only new records (for which the given GI refers to an old version)
-
-o filename -
Output file name for the XML INSDSet (default = stdout)
-
-v -
Fetch SNP Variations
Releases
Unchanged in 10 releases since Debian 4.0 (Etch).