gsort1
Sort genomic data
Usage
gsort [--chromosomemappings
CHROMOSOMEMAPPINGS]
[--memory
MEMORY]
[--parent]
PATH
GENOME
Overview
Positional arguments:
PATH
|
a tab-delimited file to sort |
|---|---|
GENOME
|
a genome file of chromosome sizes and order |
Options
-
--chromosomemappings CHROMOSOMEMAPPINGS, -c CHROMOSOMEMAPPINGS -
a file used to re-map chromosome names for example from hg19 to GRCh37
-
--memory MEMORY, -m MEMORY -
megabytes of memory to use before writing to temp files. [default: 2800]
-
--parent, -p -
for gff only. given rows with same chrom and start put those with a 'Parent' attribute first
-
--help, -h -
display this help and exit
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).