graphdump1
Build the compacted de bruijn graph from many complete genomes
Overview
USAGE:
- graphdump
-
-k<integer> [-s <>] ...-f<seq|group|dot|gfa1|gfa2|fasta> [--prefix] [--] [--version] [-h] <file name>
Where:
-k <integer>, --kvalue <integer>
- (required)
-
Value of k
-
-s <>, --seqfile <> -
(accepted multiple times)
-
sequences file name
-f <seq|group|dot|gfa1|gfa2|fasta>, --format <seq|group|dot|gfa1|gfa2
|
|fasta> |
|
(required)
|
Output format |
--prefix
-
Add a prefix to segments in GFA (in case if you have genomes with identical FASTA headers)
--, --ignore_rest
-
Ignores the rest of the labeled arguments following this flag.
--version
-
Displays version information and exits.
-h, --help
|
Displays usage information and exits. |
|
|
<file name> |
|
(required)
|
input file name |
|
This utility converts the binary output of TwoPaCo to another format |
Releases
Unchanged in 2 releases since Debian 12 (Bookworm).