glistmaker1
Generate a list of all unique k-mers in input file with their frequencies
Usage
glistmaker <INPUTFILES>
[OPTIONS]
Options
-v, --version - print version information and exit
-h, --help - print this usage screen and exit
-w, --wordlength NUMBER - specify index wordsize (1-32) (default 16)
-c, --cutoff NUMBER - specify frequency cut-off (default 1)
-o, --outputname STRING - specify output name (default "out")
--num_threads - number of threads the program is run on (default MIN(8, num_input_files))
--max_tables - maximum number of temporary tables (default MAX(num_threads, 2))
--table_size - maximum size of the temporary table (default 500000000)
-D - increase debug level
Examples
You could find some usage examples in /usr/share/doc/genometester/README.GenomeTester4.md
Releases
Unchanged in 4 releases since Debian 10 (Buster).