getVariance(1)

getVariance1

Estimates variance of mcmc samples

Usage

getVariance -o <outFileName> [OPTIONS] [sampleFiles]

Overview

Estimates variance of MCMC samples from 1 or multiple replicates.

[sample Files] should contain transposed MCMC samples from replicates.

Options

--help

Show this help information.

-l , --log

Use logged values. (default: Off)

--norm=<normalization>

Normalization constants for each input file provided as comma separated list of doubles (e.g. 1.0017,1.0,0.9999 ).

-o <outFileName> , --outFile=<outFileName>

Name of the output file.

-t <type> , --type=<type>

Type of variance, possible values: [sample,sqDif] for sample variance or squared difference. (default: sample)

-v , --verbose

Verbose output. (default: Off)

Releases

4 releases since Debian 10 (Buster); the text changed 2 times.

  1. 10
  2. 11
  3. 12–13

From bitseq 0.7.5+dfsg-6 in Debian 13 (Trixie). Parsed by carta from the page's man source.