getCounts1
Generate read counts for each input file
Usage
getCounts.py [options]
[<inputFile.thetaMeans>]
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Overview
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This program reads supplied .thetaMeans files and using either information from .prob files or Nmap option generates read counts for each input file provided.
Options
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-h, --help -
show this help message and exit
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-o OUT, --outFile=OUT -
Output file
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-v, --verbose -
Verbose output
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-p PROBDIR, --probDir=PROBDIR -
Directory with .prob files. The program will look in here for files with same name except fot extension .prob in order to find out total-aligned-read counts for each experiment.
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-n NMAP, --Nmap=NMAP -
Comma separated list of total aligned-read-counts for each experiment.
Releases
4 releases since Debian 10 (Buster); the text changed 2 times.