forge1
Training program for snap
Usage
forge [options]
<ann>
<dna>
[options]
Options
-help
-verbose
-
-pseudocount <float> -
[1] (absolute number for all models)
-pseudoCoding <float> [0.0] (eg. 0.05)
-pseudoIntron <float> [0.0]
-
-pseudoInter <float> -
[0.0]
-
-min-counts -
[0]
-lcmask [-fragmentN]
-
-utr5-length <int> -
[50]
-
-utr5-offset <int> -
[10]
-
-utr3-length <int> -
[50]
-
-utr3-offset <int> -
[10]
-
-explicit <int> -
[250]
-
-min-intron <int> -
[30]
-
-boost <file> -
(file of ID <int>)
Releases
Unchanged in 6 releases since Debian 8 (Jessie).