fathom1
Sequence and annotation tool
Usage
fathom <ann>
<dna>
<commands>
Options
-
-help -
report useful information
-validate [-quiet]
-gene-stats [-errors-ok -nucleotide -dinucleotide]
-categorize <int>
-export <int> [-plus -errors-ok]
-extract <feature> -length <int> -offset <int>
-exon-intron
-split <-number <int> | -training <float> | -GC <float> | -repeat <float>>
-ace-format <-gene-method <string> [-dna -extra <string>]>
-compare-genes <predictions> [-details]
-score-genes <hmm> [-errors-ok]
-filter-genes <hmm> -min-score <float> -min-length <int>
Releases
Unchanged in 6 releases since Debian 8 (Jessie).