extractalign1e
Extract regions from a sequence alignment
Usage
extractalign -sequence
seqset
-regions
range
-outseq
seqoutall
extractalign -help
Overview
extractalign is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment,Data retrieval:Sequence data,Edit" command group(s).
Options
Input section
-
-sequence seqset
Required section
-
-regions range -
Regions to extract. A set of regions is specified by a set of pairs of positions. The positions are integers. They are separated by any non-digit, non-alpha character. Examples of region specifications are: 24-45, 56-78 1:45, 67=99;765..888 1,5,8,10,23,45,57,99 Default value: $(sequence.begin)-$(sequence.end)
Output section
-
-outseq seqoutall
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.