einverted1e
Finds inverted repeats in nucleotide sequences
Usage
einverted -sequence
seqall
-gap
integer
-threshold
integer
-match
integer
-mismatch
integer
[-maxrepeat
integer]
-outfile
outfile
-outseq
seqout
einverted -help
Overview
einverted is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Repeats,Nucleic:2D structure" command group(s).
Options
Input section
-
-sequence seqall
Required section
-
-gap integer -
Default value: 12
-
-threshold integer -
Default value: 50
-
-match integer -
Default value: 3
-
-mismatch integer -
Default value: -4
Additional section
-
-maxrepeat integer -
Maximum separation between the start of repeat and the end of the inverted repeat. Default value: 2000
Output section
-
-outfile outfile
-
-outseq seqout -
The sequence of the inverted repeat regions without gap characters.
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.