edialign(1e)

Usage

edialign -sequences seqset -nucmode list -revcomp boolean [-overlapw selection] [-linkage list] [-maxfragl integer] -fragmat boolean -fragsim integer [-itscore boolean] [-threshold float] -mask boolean -dostars boolean -starnum integer -outfile outfile -outseq seqoutall

edialign -help

Overview

edialign is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Multiple" command group(s).

Options

Input section

-sequences seqset

Additional section

-nucmode list: Nucleic acid sequence alignment mode (simple, translated or mixed) Default value: n

-revcomp boolean: Default value: N

-overlapw selection: By default overlap weights are used when Nseq =<35 but you can set this to 'yes' or 'no' Default value: default (when Nseq =< 35)

-linkage list: Clustering method to construct sequence tree (UPGMA, minimum linkage or maximum linkage) Default value: UPGMA

-maxfragl integer: Default value: 40

-fragmat boolean: Default value: N

-fragsim integer: Default value: 4

-itscore boolean: Default value: N

-threshold float: Default value: 0.0

Output section

-mask boolean: Default value: N

-dostars boolean: Default value: N

-starnum integer: Default value: 4

-outfile outfile

-outseq seqoutall

Releases

9 releases since Debian 5.0 (Lenny); the text changed 2 times.