dotmatcher1e
Draw a threshold dotplot of two sequences
Usage
dotmatcher -asequence
sequence
-bsequence
sequence
[-matrixfile
matrix]
[-windowsize
integer]
[-threshold
integer]
-stretch
toggle
-graph
graph
-xygraph
xygraph
dotmatcher -help
Overview
dotmatcher is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Dot plots" command group(s).
Options
Input section
-
-asequence sequence
-
-bsequence sequence
-
-matrixfile matrix -
This is the scoring matrix file used when comparing sequences. By default it is the file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These files are found in the 'data' directory of the EMBOSS installation.
Additional section
-
-windowsize integer -
Default value: 10
-
-threshold integer -
Default value: 23
Output section
-
-stretch toggle -
Display a non-proportional graph Default value: N
-
-graph graph
-
-xygraph xygraph
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.