cpgreport1e
Identify and report cpg-rich regions in nucleotide sequence(s)
Usage
cpgreport -sequence
seqall
-score
integer
-outfile
outfile
-outfeat
featout
cpgreport -help
Overview
cpgreport is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:CpG Islands" command group(s).
Options
Input section
-
-sequence seqall
Required section
-
-score integer -
This sets the score for each CG sequence found. A value of 17 is more sensitive, but 28 has also been used with some success. Default value: 17
Output section
-
-outfile outfile
-
-outfeat featout -
File for output features
Releases
9 releases since Debian 5.0 (Lenny); the text changed 2 times.