bp_chaos_plot1p
A chaos plot from dna and rna sequences
Usage
bp_chaos_plot.pl -i/--input=INPUTFILE
-f/--format=SEQFORMAT
-o/--output=OUTPUTFILE
-g/--graphics=GRAPHIC
FORMAT
-w/--width=WIGHT
-h/--height=HEIGHT
Overview
This scripts generates image files using GD image library to visualize nucleotide sequences using chaos plot.
Options
Valid graphics formats are currently gd, gd2, png, wbmp, jpeg and gif.
The default size of the image file is 600x400.
The sequence input can be provided using any of the three methods:
- unnamed argument
-
bp_chaos_plot filename
- named argument
-
bp_chaos_plot -i filename
- standard input
-
bp_chaos_plot < filename
Feedback
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
[email protected] - General discussionhttp://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issuesAUTHOR - Jason Stajich
Email [email protected]
Releases
6 releases since Debian 5.0 (Lenny); the text changed 5 times.