bbFilter1

Overview

bbFilter <backbone file> <independent dist> <output file> <beast|gp> [<seq1> <seq2>...<seqN>]
seq index starts at 0.

Examples

Example:

bbFilter my_alignment.backbone 50 my_feats.bin gp

the above command extracts binary features from "my_alignment.backbone" which are separated by a minimum of 50nt sequence conserved among all taxa in the alignment. The output is written to my_feats.bin in genoplast format

Example 2:

bbFilter aln.backbone 100 feats.xml beast 0 1 2 5 6

the above command extracts binary features from "aln.backbone" which are separated by a minimum of 100nt sequence conserved among genomes 0,1,2,5, and 6 from the alignment. The output is written to feats.xml in beast format