alignment-info(1)

alignment-info1

Show useful statistics about the alignment.

Usage

alignment-info alignment-file [tree-file] [OPTIONS]

Overview

Show useful statistics about the alignment.

Allowed options:

-h, –help

produce help message

–align arg

file with sequences and initial alignment

–tree arg

file with initial tree

–alphabet arg

specify the alphabet: DNA, RNA, Amino-Acids, Triplets, or Codons

-e, –erase-empty-columns

Remove columns with no characters (all gaps).

-N, –show-names

Print the sequence-names and exit

-L, –show-lengths

Print the sequence-lengths and exit

Reporting bugs:

BAli-Phy online help: ⟨http://www.bali-phy.org/docs.php⟩\c .

Please send bug reports to ⟨[email protected]⟩\c .

Releases

4 releases since Debian 10 (Buster); the text changed 2 times.

  1. 10
  2. 11–12
  3. 13

Authors

Benjamin Redelings.

From bali-phy 4.0-1 in Debian 13 (Trixie). Parsed by carta from the page's man source.