ali2gff1
Module to translate a mummer output files into gff formatted output.
Usage
ali2gff [-r]
[{-t
<. | 0 | 1 | 2>}]
[-x
<name>]
[-y
<name>]
[-H]
[-f]
[-h]
<MUMmer_output_file>
Options
-
-h, --help -
Show summary of options.
-
-r -
Interchange the order of sequences (sequence 1 on y-axis, sequence 2 on x-axis).
-
-t <.|0|1|2> -
Put label 'frame' in gff output.
-
-x <name> -
Specify the species name for species1 (default: "Seq1").
-
-y <name> -
Specify the species name for species2 (default: "Seq2").
-
-i -
Ignore full sequence identities.
-
-f -
Write output to file.
Releases
Unchanged in 11 releases since Debian 3.1 (Sarge).