CAT1
Tool for taxonomic classification of contigs and metagenome-assembled genomes (mags)
Usage
CAT {(prepare | contigs | bin | bins | add_names | summarise)
[-v
/
--version]
[-h
/
--help]}
Overview
Run Contig Annotation Tool (CAT) or Bin Annotation Tool (BAT).
Options
Required choice:
prepare
|
Download database files and construct databases. |
|---|---|
contigs
|
Run CAT. |
bin
|
Run BAT on a single bin. |
bins
|
Run BAT on a set of bins. |
add_names
|
Add taxonomic names to CAT or BAT output files. |
summarise
|
Summarise a named CAT or BAT classification file. |
Optional arguments:
-
-v, --version -
Print version information and exit.
-
-h, --help -
Show this help message and exit.
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).