Bio::Graphics::Glyph::transcript2(3pm)

Usage

  See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

Overview

This glyph is used for drawing transcripts. It is like "transcript" except that if there is sufficient room the terminal exon is shaped like an arrow in order to indicate the direction of transcription. If there isn't enough room, a small arrow is drawn.

Options

The following options are standard among all Glyphs. See Bio::Graphics::Glyph for a full explanation.

  Option      Description                      Default
  ------      -----------                      -------
  -fgcolor      Foreground color               black
  -outlinecolor Synonym for -fgcolor
  -bgcolor      Background color               turquoise
  -fillcolor    Synonym for -bgcolor
  -linewidth    Line width                     1
  -height       Height of glyph                10
  -font         Glyph font                     gdSmallFont
  -connector    Connector type                 0 (false)
  -connector_color
                Connector color                black
  -label        Whether to draw a label        0 (false)
  -description  Whether to draw a description  0 (false)
  -strand_arrow Whether to indicate            0 (false)
                 strandedness
  -hilite       Highlight color                undef (no color)

In addition, the alignment glyph recognizes the following glyph-specific options:

  Option         Description                  Default
  ------         -----------                  -------
  -arrow_length  Length of the directional   8
                 arrow.

Releases

10 releases since Debian 3.0 (Woody); the text changed 7 times.

3.0
5.0
6.0
7
8
9
10
11–13