---
name: "maf-swap"
section: "1"
platform: "linux"
package: "last-align"
version: "1609-1+b1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/maf-swap"
---

# maf-swap(1)

changes the order of the sequences in MAF-format alignments

## NAME

maf-swap - changes the order of the sequences in MAF-format alignments

## SYNOPSIS

**maf-swap** \[*options*\] *my-alignments.maf*

## DESCRIPTION

Change the order of sequences in MAF-format alignments.

## OPTIONS

- **-h**, **--help**

  show this help message and exit

- **-n** N

  move the Nth sequence to the top (default: 2)