---
name: "maf-cut"
section: "1"
platform: "linux"
package: "last-align"
version: "1609-1+b1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/maf-cut"
---

# maf-cut(1)

manual page for maf-cut 1609

## NAME

maf-cut - manual page for maf-cut 1609

## DESCRIPTION

usage: maf-cut \[-h\] segment \[alignments\] \[sequences ...\]

Get parts of MAF-format alignments.

### positional arguments:

- segment

  zero-based sequence range, e.g. chr7:123400-123500

- alignments

  file of sequence alignments in MAF format

- sequences

  file of sequences in fasta or fastq format

### options:

- **-h**, **--help**

  show this help message and exit