---
name: "maf-cull"
section: "1"
platform: "linux"
package: "last-align"
version: "490-1"
release: "Debian 8 (Jessie)"
platforms: ["linux"]
url: "https://new.carta.tech/maf-cull"
---

# maf-cull(1)

Cull alignments whose top-sequence coordinates are contained in LIMIT or more

## NAME

maf-cull - Cull alignments whose top-sequence coordinates are contained in LIMIT or more

## SYNOPSIS

**maf-cull** \[*options*\] *my-alignments.maf*

## DESCRIPTION

Cull alignments whose top-sequence coordinates are contained in LIMIT or more higher-scoring alignments.

## OPTIONS

- **-h**, **--help**

  show this help message and exit

- **-l** LIMIT, **--limit**=*LIMIT*

  culling limit (default: 2)