NAME
libscanout - Reads a DHF file and writes a file of top-scoring Classes, Folds and Superfamilies.
SYNOPSIS
libscanout -dhfinfile infile -outfile outfile
libscanout -help
DESCRIPTION
libscanout is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:3D Structure" command group(s).
OPTIONS
Input section
- -dhfinfile infile
-
This option specifies the location of the DHF file (domain hits file) (input). A ´domain hits file´ contains database hits (sequences) with domain classification information, in FASTA or EMBL formats. The hits are relatives to a SCOP or CATH family and are found from a search of a sequence database. Files containing hits retrieved by PSIBLAST are generated by using SEQSEARCH.
Required section
Output section
- -outfile outfile
-
This option specifies the location of the summary file (output). The summary file contains lists of domain Classes, Superfamilies and Families rank-ordered on the basis of score (highest-scoring first).
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
libscanout is fully documented via the tfm(1) system.
AUTHOR
Debian EMBOSS Packaging Team <[email protected]>
-
Wrote the script used to autogenerate this manual page.
COPYRIGHT
Copyright © 2007 Debian EMBOSS Packaging Team
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.