NAME
ktImportText - explore hierarchical metagenomic data with zoomable pie charts
DESCRIPTION
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Creates a Krona chart from text files listing quantities and lineages.
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ktImportText \
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[options] \ text_1[,name_1] \ [text_2[,name_2]] \ ...
- text
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Tab-delimited text file. Each line should be a number followed by a list of wedges to contribute to (starting from the highest level). If no wedges are listed (and just a quantity is given), it will contribute to the top level. If the same lineage is listed more than once, the values will be added. Quantities can be omitted if -q is specified. Lines beginning with "#" will be ignored. By default, separate datasets will be created for each input (see [-c]).
- name
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A name to show in the list of datasets in the Krona chart (if multiple input files are present and [-c] is not specified). By default, the basename of the file will be used.
- [-o <string>]
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Output file name. [Default: 'text.krona.html']
- [-n <string>]
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Name of the highest level. [Default: 'all']
- [-q]
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Files do not have a field for quantity.
- [-c]
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Combine data from each file, rather than creating separate datasets within the chart.
- [-u <string>]
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URL of Krona resources to use instead of bundling them with the chart (e.g. "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not work without access to this URL.