---
name: "ktImportMGRAST"
section: "1"
platform: "linux"
package: "radiant"
version: "2.8.1+dfsg-2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/ktImportMGRAST"
---

# ktImportMGRAST(1)

explore hierarchical metagenomic data with zoomable pie charts

## NAME

ktImportMGRAST - explore hierarchical metagenomic data with zoomable pie charts

## DESCRIPTION

-

  Creates a Krona chart from MG-RAST organism or functional analyses.

-

  ktImportMGRAST \\

-

  \[options\] \\ mgrast\_table\_1\[,name\_1\] \\ \[mgrast\_table\_2\[,name\_2\]\] \\ ...

- mgrast\_table

  A table exported from MG-RAST. It can be from organism or functional analysis, but all tables being imported should be consistent. By default, separate datasets will be created for each input (see \[-c\]).

- name

  A name to show in the list of datasets in the Krona chart (if multiple input files are present and \[-c\] is not specified). By default, the basename of the file will be used.

-

  - \[-o \<string\>\]

  Output file name. \[Default: 'mg-rast.krona.html'\]

- \[-n \<string\>\]

  Name of the highest level. \[Default: 'all'\]

- \[-c\]

  Combine data from each file, rather than creating separate datasets within the chart.

- \[-d \<integer\>\]

  Maximum depth of wedges to include in the chart.

- \[-x \<integer\>\]

  Hue (0-360) for "bad" scores. \[Default: '0'\]

- \[-y \<integer\>\]

  Hue (0-360) for "good" scores. \[Default: '120'\]

- \[-p\]

  Use percent identity for average scores instead of log\[10\] e-value.

- \[-u \<string\>\]

  URL of Krona resources to use instead of bundling them with the chart (e.g. "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not work without access to this URL.