---
name: "ktImportMETAREP-EC"
section: "1"
platform: "linux"
package: "radiant"
version: "2.8.1+dfsg-2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/ktImportMETAREP-EC"
---

# ktImportMETAREP-EC(1)

explore hierarchical metagenomic data with zoomable pie charts

## NAME

ktImportMETAREP-EC - explore hierarchical metagenomic data with zoomable pie charts

## DESCRIPTION

-

  Creates a Krona chart of abundances of EC (Enzyme Commission) numbers in METAREP data folders. By default, queries with no EC number will be ignored (see **-i**).

-

  ktImportMETAREP-EC \\

-

  \[options\] \\ metarep\_folder\_1\[,name\_1\] \\ \[metarep\_folder\_2\[,name\_2\]\] \\ ...

- metarep\_folder

  Unpacked METAREP data folder. By default, separate datasets will be created for each input (see \[-c\]).

- name

  A name to show in the list of datasets in the Krona chart (if multiple input files are present and \[-c\] is not specified). By default, the basename of the file will be used.

-

  - \[-o \<string\>\]

  Output file name. \[Default: 'metarep-ec.krona.html'\]

- \[-n \<string\>\]

  Name of the highest level. \[Default: 'root'\]

- \[-c\]

  Combine data from each file, rather than creating separate datasets within the chart.

- \[-i\]

  Include a wedge for queries with no hits.

- \[-d \<integer\>\]

  Maximum depth of wedges to include in the chart.

- \[-u \<string\>\]

  URL of Krona resources to use instead of bundling them with the chart (e.g. "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not work without access to this URL.

- \[-qp \<string\>\]

  Url to send query IDs to (instead of listing them) for each wedge. The query IDs will be sent as a comma separated list in the POST variable "queries", with the current dataset index (from 0) in the POST variable "dataset". The url can include additional variables encoded via GET.

- \[-v\]

  Verbose.