--- name: "kmos_reconstruct" section: "7" platform: "linux" package: "cpl-plugin-kmos-doc" version: "2.1.0+dfsg-1" release: "Debian 10 (Buster)" platforms: ["linux"] url: "https://new.carta.tech/kmos_reconstruct" --- # kmos\_reconstruct(7) Performs the cube reconstruction ## NAME kmos\_reconstruct - Performs the cube reconstruction ## SYNOPSIS esorex **kmos\_reconstruct** \[OPTIONS\] FILE.sof ## DESCRIPTION Data with or without noise is reconstructed into a cube using X/Y/LCAL, YCAL The input data can contain noise extensions and will be reconstructed into additional extensions. If an OH spectrum is given in the SOF file the lambda axis will be corrected using the OH lines as reference. Input files: DO KMOS \ category Type Explanation Required #Frames\ \-------- ----- ----------- -------- -------\ DARK or RAW/F2D data with Y 1 \ FLAT\_ON or RAW/F2D or without noise \ ARC\_ON or RAW/F2D \ OBJECT or RAW \ STD or RAW \ SCIENCE or RAW \ ACQUISITION RAW \ XCAL F2D x-direction calib. frame Y 1 \ YCAL F2D y-direction calib. frame Y 1 \ LCAL F2D Wavelength calib. frame Y 1 \ WAVE\_BAND F2L Table with start-/end-wavelengths Y 1 \ OH\_SPEC F1S Vector holding OH lines N 1 Output files: DO KMOS\ category Type Explanation\ \-------- ----- -----------\ CUBE\_DARK or F3I Reconstructed cube \ CUBE\_FLAT or RAW/F2D with or without noise\ CUBE\_ARC or \ CUBE\_OBJECT or \ CUBE\_STD or \ CUBE\_SCIENCE ## OPTIONS - **--imethod** *\* Method to use for interpolation. \["NN" (nearest neighbour), "lwNN" (linear weighted nearest neighbor), "swNN" (square weighted nearest neighbor), "MS" (Modified Shepard´s method)"CS" (Cubic spline)\] (str; default: ´CS´). The full name of this option for the EsoRex configuration file is **kmos.kmos\_reconstruct.imethod** \[default = *CS*\]. - **--neighborhoodRange** *\* Defines the range to search for neighbors. in pixels (float; default: 1.001). The full name of this option for the EsoRex configuration file is **kmos.kmos\_reconstruct.neighborhoodRange** \[default = *1.001*\]. - **--flux** *\* TRUE: Apply flux conservation. FALSE: otherwise (bool; default: False). The full name of this option for the EsoRex configuration file is **kmos.kmos\_reconstruct.flux** \[default = *False*\]. - **--detimg** *\* TRUE: if resampled detector frame should be created, FALSE: otherwise (bool; default: False). The full name of this option for the EsoRex configuration file is **kmos.kmos\_reconstruct.detectorimage** \[default = *False*\]. - **--file\_extension** *\* TRUE: if OBS\_ID keyword should be appended to output frames, FALSE: otherwise (bool; default: False). The full name of this option for the EsoRex configuration file is **kmos.kmos\_reconstruct.file\_extension** \[default = *False*\]. - **--pix\_scale** *\* Change the pixel scale \[arcsec\]. Default of 0.2" results into cubes of 14x14pix, a scale of 0.1" results into cubes of 28x28pix, etc. (float; default: 0.2). The full name of this option for the EsoRex configuration file is **kmos.kmos\_reconstruct.pix\_scale** \[default = *0.2*\]. - **--xcal\_interpolation** *\* TRUE: Interpolate xcal between rotator angles. FALSE: otherwise (bool; default: True). The full name of this option for the EsoRex configuration file is **kmos.kmos\_reconstruct.xcal\_interpolation** \[default = *True*\]. - **--oscan** *\* Apply Overscan Correction (bool; default: True). The full name of this option for the EsoRex configuration file is **kmos.kmos\_reconstruct.oscan** \[default = *True*\]. - **--b\_samples** *\* The number of samples in wavelength for the reconstructed cube (int; default: 2048). The full name of this option for the EsoRex configuration file is **kmos.kmos\_reconstruct.b\_samples** \[default = *2048*\]. Note that it is possible to create a configuration file containing these options, along with suitable default values. Please refer to the details provided by the 'esorex --help' command. ## SEE ALSO The full documentation for the kmos pipeline can be downloaded as a PDF file using the following URL: - **ftp://ftp.eso.org/pub/dfs/pipelines/kmos/kmos-pipeline-manual-2.9.pdf** An overview over the existing ESO pipelines can be found on the web page **https://www.eso.org/sci/software/pipelines/**. Basic documentation about the EsoRex program can be found at the esorex (1) man page. It is possible to call the pipelines from python using the python-cpl package. See **https://packages.python.org/python-cpl/index.html** for further information. The other recipes of the kmos pipeline are [*kmo\_arithmetic*(7)](/kmo_arithmetic/7.md), [*kmo\_copy*(7)](/kmo_copy/7.md), [*kmo\_fit\_profile*(7)](/kmo_fit_profile/7.md), [*kmo\_fits\_strip*(7)](/kmo_fits_strip/7.md), [*kmo\_make\_image*(7)](/kmo_make_image/7.md), [*kmo\_noise\_map*(7)](/kmo_noise_map/7.md), [*kmo\_rotate*(7)](/kmo_rotate/7.md), [*kmo\_shift*(7)](/kmo_shift/7.md), [*kmo\_sky\_mask*(7)](/kmo_sky_mask/7.md), [*kmo\_stats*(7)](/kmo_stats/7.md), [*kmos\_combine*(7)](/kmos_combine/7.md), [*kmos\_dark*(7)](/kmos_dark/7.md), [*kmos\_extract\_spec*(7)](/kmos_extract_spec/7.md), [*kmos\_flat*(7)](/kmos_flat/7.md), [*kmos\_gen\_reflines*(7)](/kmos_gen_reflines/7.md), [*kmos\_gen\_telluric*(7)](/kmos_gen_telluric/7.md), [*kmos\_illumination*(7)](/kmos_illumination/7.md), [*kmos\_sci\_red*(7)](/kmos_sci_red/7.md), [*kmos\_sky\_tweak*(7)](/kmos_sky_tweak/7.md), [*kmos\_std\_star*(7)](/kmos_std_star/7.md), [*kmos\_test*(7)](/kmos_test/7.md), [*kmos\_wave\_cal*(7)](/kmos_wave_cal/7.md) ## VERSION kmos\_reconstruct 2.1.0 ## AUTHOR Alex Agudo Berbel, Y. Jung \ ## BUG REPORTS Please report any problems to usd-help@eso.org. Alternatively, you may send a report to the ESO User Support Department \. ## LICENSE This file is part of the CRIRES Instrument Pipeline Copyright (C) 2002,2003 European Southern Observatory This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA