kmc_tools-histogram1

Produce histogram of k-mer occurrences

Usage

kmc_tools histogram <inputdb> [input_params] <output>

This command produces a histogram of k-mer occurrences.

For each input there are additional parameters:

-ci<value>

exclude k-mers occurring less than <value> times

-cx<value>

exclude k-mers occurring more of than <value> times

kmc_tools histogram wy_kmc2 -ci3 -cx1000 histo.txt

KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.