---
name: "hts-nim-tools"
section: "1"
platform: "linux"
package: "hts-nim-tools"
version: "0.2.1-1"
release: "Debian 12 (Bookworm)"
platforms: ["linux"]
url: "https://new.carta.tech/hts-nim-tools"
---

# hts-nim-tools(1)

manual page for hts-nim-tools

## NAME

hts-nim-tools - manual page for hts-nim-tools

## DESCRIPTION

hts-nim utility programs. version: 0.2.0

- ??? bam-filter

  : filter BAM/CRAM/SAM files with a simple expression language

-

  ??? copy-number-sampler : sample BAM regions with a probability given in a BED file (for creating CN truth-sets) ??? count-reads         : count BAM/CRAM reads in regions given in a BED file ??? vcf-check           : check regions of a VCF against a background for missing chunks

hts-nim utility programs. version: 0.2.0

- ??? bam-filter

  : filter BAM/CRAM/SAM files with a simple expression language

-

  ??? copy-number-sampler : sample BAM regions with a probability given in a BED file (for creating CN truth-sets) ??? count-reads         : count BAM/CRAM reads in regions given in a BED file ??? vcf-check           : check regions of a VCF against a background for missing chunks