---
name: "hits_to_fastq"
section: "1"
platform: "linux"
package: "seer"
version: "1.1.4-8+b1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/hits_to_fastq"
---

# hits\_to\_fastq(1)

create a fastq for mapping from significant kmers

## NAME

hits\_to\_fastq - create a fastq for mapping from significant kmers

## SYNOPSIS

**hits\_to\_fastq** *-k \<significant\_kmers.txt\> -b \<bonferroni\_correction\>*

## DESCRIPTION

Creates a fastq for mapping from significant kmers

## OPTIONS

### Required

- **-k**, **--kmers**

  Significant kmers, as output by seer

- **-b**, **--bonf**

  Bonferroni correction to use (try 10e-8)

### Optional

- **-h**, **--help**

  Displays this message

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.