NAME
hinge - assembler for long-read sequencing data
SYNOPSIS
hinge {subcommand} options files
OPTIONS
Subcommands are described below. Run each subcommand without arguments for usage information.
- filter
-
filter out short reads and long chimeric reads.
- maximal
-
get maximal reads.
- layout
-
generate a layout for assembly
- clip
-
prune and clip output of the layout command
- draft-path
-
get assembly graph as list of nodes
- draft
-
construct draft assembly
- correct-head
-
convert fasta file to daligner-specific format
- consensus
-
construct consensus sequence
- gfa
-
Create a graphical fragment assembly file from consensus output
visualize, visualise