---
name: "gthsplit"
section: "1"
platform: "linux"
package: "genomethreader"
version: "1.7.3+dfsg-10+b1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/gthsplit"
---

# gthsplit(1)

split GenomeThreader output files

## NAME

gthsplit - split GenomeThreader output files

## SYNOPSIS

**gthsplit**  -alignmentscore \| -coverage \[option ...\] \[file ...\]

## DESCRIPTION

Split GenomeThreader output files containing intermediate results.

## OPTIONS

- **-alignmentscore**

  split according to the overall alignment score (scr) default: no

- **-coverage**

  split according to coverage (cov) default: no

- **-range**

  set the percentage range used to create the sets default: 5

- **-minalignmentscore**

  set the minimum alignment score for spliced alignments to be included into the set of spliced alignments default: 0.00

- **-maxalignmentscore**

  set the maximum alignment score for spliced alignments to be included into the set of spliced alignments default: 1.00

- **-mincoverage**

  set the minimum coverage for spliced alignments to be included into the set of spliced alignments default: 0.00

- **-maxcoverage**

  set the maximum coverage for spliced alignments to be included into the set of spliced alignments default: 9999.99

- **-v**

  be verbose default: no

- **-gzip**

  write gzip compressed output file(s) default: no

- **-bzip2**

  write bzip2 compressed output file(s) default: no

- **-force**

  force writing to split files default: no

- **-help**

  display help and exit

- **-version**

  display version information and exit