NAME
gthsplit - split GenomeThreader output files
SYNOPSIS
gthsplit -alignmentscore | -coverage [option ...] [file ...]
DESCRIPTION
Split GenomeThreader output files containing intermediate results.
OPTIONS
- -alignmentscore
-
split according to the overall alignment score (scr) default: no
- -coverage
-
split according to coverage (cov) default: no
- -range
-
set the percentage range used to create the sets default: 5
- -minalignmentscore
-
set the minimum alignment score for spliced alignments to be included into the set of spliced alignments default: 0.00
- -maxalignmentscore
-
set the maximum alignment score for spliced alignments to be included into the set of spliced alignments default: 1.00
- -mincoverage
-
set the minimum coverage for spliced alignments to be included into the set of spliced alignments default: 0.00
- -maxcoverage
-
set the maximum coverage for spliced alignments to be included into the set of spliced alignments default: 9999.99
- -v
-
be verbose default: no
- -gzip
-
write gzip compressed output file(s) default: no
- -bzip2
-
write bzip2 compressed output file(s) default: no
- -force
-
force writing to split files default: no
- -help
-
display help and exit
- -version
-
display version information and exit